HsaEX6069937 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124382317-124387660:+
Coord C1 exon
chr12:124382317-124382514
Coord A exon
chr12:124383200-124383361
Coord C2 exon
chr12:124387486-124387660
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAGGTGCCCTCTTTCCTCAGCTC
3' ss Score
7.42
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGTATAATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGACCACTACAGCCAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTGTAATATAG
Seq A exon
CTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGCTGTAG
Seq C2 exon
CCGAGGAGAAGAAGAAACTGGCAGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAAGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGCAGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAACTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'59-60,'59-59,60-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(21.3=85.1)
A:
PF127772=MT=PU(15.1=92.7)
C2:
PF127772=MT=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCAACTATGTCACTCCC
R:
GTCCGACTTGTCCAGCTTCTG
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)