GgaEX6013582 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4917706-4919490:-
Coord C1 exon
chr15:4919293-4919490
Coord A exon
chr15:4918443-4918604
Coord C2 exon
chr15:4917706-4917880
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTCCTTTCTAGTAC
3' ss Score
11.05
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GAAGTAACACACGCATTCCAGCAGAGAGCTCCAAGATGGTGGTTGAGCACATGGTTGTGGTGCATGAATCTGTAGAGATTTTCAGCAAGAGGTTTCTGCAGAAATTAAGGCGTAGTAACCATGTCACGCCAAAGAATTACCTTGATTTTATCCATATGTATTCAAAATTGCTTGAGGAGAAAAATGAGTTCATTTTAG
Seq A exon
TACAATGCAAACGGCTGGAGGGGGGCCTAGATAAACTGAAGGAAGCTAGTGTGCAGCTGGTTGAGCTGAACAAGAAACTTGCAGAGCAAAAGATCGTGCTAGCAGAAAAATCAGCTGCTTGTGAGGCTTTGTTAAAAGAGATTTCAGCAAACACAGAAGTAG
Seq C2 exon
CTGAAGCAAAGAAAAAACTGGCTGAAGAAAAAGCTACGGAGATACAGGAACAGAATAGGATTATTGCTATGGAGAAGGCGGCTGCTGAGGCAGCTCTGGCTGAAGTTATGCCTGTTTTAGAAGCTGCCAAACTGGAGCTGCAGAAGCTTGACAAGTCTGATGTTACTGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'53-54,'53-53,55-54=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(21.3=85.1)
A:
PF127772=MT=PU(15.1=92.7)
C2:
PF127772=MT=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGGTTGAGCACATGGT
R:
GCCGCCTTCTCCATAGCAATA
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]