GgaEX6013582 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4871044-4872828:-
Coord C1 exon
chr15:4872631-4872828
Coord A exon
chr15:4871781-4871942
Coord C2 exon
chr15:4871044-4871218
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTCCTTTCTAGTAC
3' ss Score
11.05
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GAAGTAACACACGCATTCCAGCAGAGAGCTCCAAGATGGTGGTTGAGCACATGGTTGTGGTGCATGAATCTGTAGAGATTTTCAGCAAGAGGTTTCTGCAGAAATTAAGGCGTAGTAACCATGTCACGCCAAAGAATTACCTTGATTTTATCCATATGTATTCAAAATTGCTTGAGGAGAAAAATGAGTTCATTTTAG
Seq A exon
TACAATGCAAACGGCTGGAGGGGGGCCTAGATAAACTGAAGGAAGCTAGTGTGCAGCTGGTTGAGCTGAACAAGAAACTTGCAGAGCAAAAGATCGTGCTAGCAGAAAAATCAGCTGCTTGTGAGGCTTTGTTAAAAGAGATTTCAGCAAACACAGAAGTAG
Seq C2 exon
CTGAAGCAAAGAAAAAACTGGCTGAAGAAAAAGCTACGGAGATACAGGAACAGAATAGGATTATTGCTATGGAGAAGGCGGCTGCTGAGGCAGCTCTGGCTGAAGTTATGCCTGTTTTAGAAGCTGCCAAACTGGAGCTGCAGAAGCTTGACAAGTCTGATGTTACTGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'60-70,'60-69,62-70=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(20.9=84.8)
A:
PF127772=MT=PU(18.3=92.7)
C2:
PF127772=MT=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGGTTGAGCACATGGT
R:
GCCGCCTTCTCCATAGCAATA
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]