BtaEX6072264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007272 | ATP6V0A2
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a2 (ATP6V0A2), mRNA. [Source:RefSeq mRNA;Acc:NM_176637]
Coordinates
chr17:54218115-54221458:-
Coord C1 exon
chr17:54221376-54221458
Coord A exon
chr17:54219011-54219104
Coord C2 exon
chr17:54218115-54218327
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCGAATCCTGTCTTCTAGTTA
3' ss Score
6.19
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGAGAAGTCATAAAATGGTATGTCTTTTTGATATCCTTTTGGGGAGAGCAGATTGGCCACAAGGTTAAGAAGATATGTGATTG
Seq A exon
TTACCACTGCCACGTTTACCCCTACCCCAACACAGCCGAGGAGCGCAGAGAGATCCAGGAGGGACTGAATACCCGGATTCAAGATCTTTACACC
Seq C2 exon
GTGCTTCACAAGACCGAGGACTATTTAAGGCAAGTGCTGTGTAAAGCCGCCGAGTCGGTCTACAGCCGCGTGATCCAGGTGAAGAAGATGAAAGCCATTTACCACATGCTGAACATGTGCAGCTTCGACGTGACCAACAAGTGCCTCATCGCCGAGGTCTGGTGTCCTGAGGCTGATTTGCACGAGCTGCGAAGGGCGCTGGAGGAGGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007272-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.3=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGATTGGCCACAAGGTT
R:
CTTGTTGGTCACGTCGAAGCT
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]