RnoEX0013269 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37381561-37383615:-
Coord C1 exon
chr12:37383533-37383615
Coord A exon
chr12:37382381-37382474
Coord C2 exon
chr12:37381561-37381773
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTGAATTCTGTCCCCTAGTTA
3' ss Score
7.21
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGTGAAGTCATAAAGTGGTATGTGTTCCTGATCTCGTTTTGGGGAGAGCAGATTGGCCACAAGGTTAAGAAGATCTGTGACTG
Seq A exon
TTACCACTGCCACATCTACCCGTATCCAAACACGGCCGAGGAGCGCAGGGAGATCCAGGAGGGGCTCAATACTCGGATCCAAGACCTTTACACT
Seq C2 exon
GTGCTGCACAAAACGGAGGACTACCTGCGGCAAGTGCTGTGCAAGGCTGCCGAGTCCGTGTGCAGCCGTGTGATACAGGTGCGGAAGATGAAAGCCATCTACCACATGCTCAACATGTGCAGCTTTGACGTCACCAACAAGTGCCTCATAGCTGAGGTCTGGTGCCCCGAGGTGGACCTGCCCGGCTTGCGCAGAGCGCTGGAGGAAGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'38-36,'38-35,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.3=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGGAGAGCAGATTGGC
R:
TGACGTCAAAGCTGCACATGT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]