DreEX6010697 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24044636-24048776:+
Coord C1 exon
chr5:24044636-24044718
Coord A exon
chr5:24045475-24045568
Coord C2 exon
chr5:24048564-24048776
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGAAACTTTTGTGTCTGTAGCTA
3' ss Score
5.11
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTGAGCCGACTAGGAGTGTGGTGTTCCTCATCTCTTACTGGGGAGAACAGATTGGACAGAAAGTGAAAAAGATATGTGATTG
Seq A exon
CTACCACTGTCACCTGTACCCATACCCCAACAGTAATGAGGAGAGGACCGATGTGGTGGAGGGCCTCCGAACACGCATTCAGGACTTGCACACA
Seq C2 exon
GTTCTACACCGTACTGAGGATTACCTGAGGCAAGTGTTGATCAAGGCCTCAGAGTCTGTGTACATTTGGGTGATCCAGGTGAAGAAAATGAAAGCTATATACCACATCCTCAACCTCTGCAGCTTTGACGTCACAAACAAGTGCCTTATAGCTGAGGTGTGGTGTCCTGTCAATGATCTGCCCGCGCTTCGGAGAGCACTAGAAGATGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'6-12,'6-10,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.3=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGGAGAACAGATTGGACA
R:
TGTGACGTCAAAGCTGCAGAG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]