GgaEX6013591 @ galGal3
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
NA
Coordinates
chr15:4964440-4965477:-
Coord C1 exon
chr15:4965395-4965477
Coord A exon
chr15:4964965-4965058
Coord C2 exon
chr15:4964440-4964652
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGATTTCTGTGTTTCTGCAGTTA
3' ss Score
7.65
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTGAAACCACAAAATGGTTTGTGTTTTTAGTGTCCTATTGGGGTGAACAAATTGGCCAGAAAGTTAAGAAGATTTGTGACTG
Seq A exon
TTACCGCTGTCATGTGTATCCCTACCCAAGTACTGTGGATGAGCGCGTAGCGGTTGTTGAAGGGCTGAATGTTCGTATTCAGGATCTTCGTACA
Seq C2 exon
GTTCTGCATAAAACTGAGGATTACTTACGCCAAGTTCTGTGTAAAGCCTCCGAATCCATCTATACGTGGGTTATCCAAGTAAAGAAGATGAAAGCCATTTATCACGTACTCAACCTGTGCAGTTTTGATGTCACAAACAAATGTTTGATTGCTGAGGTTTGGTGTCCCGTGGCTGATCTGCAGAACTTGCGCCATGCGTTGGAGGAAGGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'12-10,'12-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.4=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGTGAACAAATTGGCCA
R:
ACTGCACAGGTTGAGTACGTG
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]