MmuEX6021029 @ mm9
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:125095548-125097397:+
Coord C1 exon
chr5:125095548-125095630
Coord A exon
chr5:125096526-125096619
Coord C2 exon
chr5:125097185-125097397
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTGAAGTCTGTCCTCTAGTTA
3' ss Score
3.64
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTGAAGTCATAAAGTGGTACGTGTTCCTGATTTCCTTTTGGGGAGAGCAGATTGGCCACAAGGTTAAGAAGATATGTGACTG
Seq A exon
TTACCACTGCCACATCTACCCGTATCCAAACACGGCTGAGGAGCGCAGGGAGATTCAGGAGGGGCTCAATACTCGGATCCAAGACCTTTACACG
Seq C2 exon
GTGCTGCACAAAACGGAGGACTATCTGCGGCAAGTGCTCTGCAAAGCTGCCGAGTCCGTGTGCAGCCGTGTGGTCCAGGTGAGGAAGATGAAGGCCATCTACCACATGCTCAACATGTGCAGCTTTGACGTCACCAACAAGTGCCTCATAGCTGAGGTCTGGTGCCCCGAGGTGGACCTGCCAGGCTTGCGCAGAGCACTGGAGGAAGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.3=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGGAGAGCAGATTGGC
R:
TGACGTCAAAGCTGCACATGT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: