BtaEX6073575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68253539-68260228:+
Coord C1 exon
chr17:68253539-68253731
Coord A exon
chr17:68255967-68256152
Coord C2 exon
chr17:68260063-68260228
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCCCCGGCATCTCTCCCCAGCCT
3' ss Score
6.2
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGAAGAGCGTGAACCTGTCCGAGGGGGAGCTGCTTTCCATCCGAGGGGTGGACGGCCCCTCTCTGACCGTCCTGGCCAACCACACGCTCCTGGTCGAGGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTGTACTTCCGCACCTTCCAGGACGACGGCCTCGGGACCTTCCAGCTGCACTACCAGG
Seq A exon
CCTTCATGCTGAGCTGCAGCTTCCCCCGCCGGCCTGACTTCGGGGACGTCACGGTGATGGACCTGCACTCGGGCGGGGAGGCCCACTTCCACTGCCACCTGGGCTATGAGCTCCAGGGCGCCAAGACACTGACGTGCATCAATGCCTCCAAGCCCCACTGGAGCAGCCGGGAGCCCATCTGCTCAG
Seq C2 exon
CCCCTTGTGGAGGGGCGGTGCACAACGCCACCATCGGCCGCGTCCTGTCCCCAAGTCACTCTGCAAATGCCAGTGGGAGCCAGTTCTGCGTGTGGACGATCGAGGCTCCGGAGGGCCAGAAGCTGCACCTGCACTTTGAGAGGCTGGCGCTGCACAAGAGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'4-7,'4-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.5=95.4)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAGCGTGAACCTGTCC
R:
CAGAGTGACTTGGGGACAGGA
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]