MmuEX6019721 @ mm9
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112894966-112901943:-
Coord C1 exon
chr5:112901751-112901943
Coord A exon
chr5:112900617-112900802
Coord C2 exon
chr5:112894966-112895131
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGTTGCTGTCTTCTCCGCAGCCT
3' ss Score
8.94
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTCAAGAGTGTCAACCTCTCCGAGGGGGAGCTGCTCTCCATCCGAGGAGTGGACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGATGGCCTCGGGACCTTCCAGCTACATTACCAGG
Seq A exon
CCTTCATGCTGAGCTGCCCCTTTCCCCGGAGGCCCGATGCCGGAGAGGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGCCCACTTCCATTGCCACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAG
Seq C2 exon
CCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCATGAGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.5=95.4)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACTCTGACAGTCCTGG
R:
CTGGAGCCTCTATGGTCCACA
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: