MmuEX6019721 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112465946-112475586:-
Coord C1 exon
chr5:112475029-112475586
Coord A exon
chr5:112471597-112471782
Coord C2 exon
chr5:112465946-112466111
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGTTGCTGTCTTCTCCGCAGCCT
3' ss Score
8.94
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCTGGAGAGTAGCCTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCCTGCGCTGCCCGACGAGGCCAGTGTCCAGCACACGCCTGCCCTAAGGAAGGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGGAGGCAGCTGAGGCCCCTGGCTACCCCGACAACTCTGCAGAGACTGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGCCTGAAGACCCCGAGCAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCCTTCACTGCACTGGCGACCACACTCCCACACAGCCCTCAGCCCGCTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGCTGGACAAGGGGGACAATGAGCTGACCGGGTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTCCACCATCGTCACTACCACCATCATCACCACGGAGCAGGCCCCAG
Seq A exon
CCTTCATGCTGAGCTGCCCCTTTCCCCGGAGGCCCGATGCCGGAGAGGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGCCCACTTCCATTGCCACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAG
Seq C2 exon
CCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCATGAGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGGGACAATGAGCTGAC
R:
CAAGGTGCAGGTGAAGCTTCT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types