RnoEX0079965 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50191970-50197446:+
Coord C1 exon
chr12:50191970-50192162
Coord A exon
chr12:50192814-50192999
Coord C2 exon
chr12:50197281-50197446
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGTTGCTCCTTTCTCCGCAGCTT
3' ss Score
9.35
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAAGAGTGTCAACCTATCTGAGGGGGAGCTGCTCTCCATCCGAGGAGTGGACGGCCCCACCCTGACAGTCCTGGCCAACCAGACTCTCCTGGTGGAGGGCCAGGTGATCCGAAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGACAACCTTGGGACCTTCCAGCTACATTACCAAG
Seq A exon
CTTTCATGCTGAGCTGCAACTTTCCCCGACGGCCCGATGCTGGAGACGTCACAGTGATGGATCTGCACTCTGGCGGGGTGGCCCACTTCCACTGCCACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAG
Seq C2 exon
CCCCGTGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTGTCCCCCAGTTACCCGGGAAACACCAATGGCAGCCAGCTCTGTGTGTGGACCATCGAGGCTCCAGAGGGCCAGAAGCTTCACTTGCATCTTGAAAGGCTACTGCTGCATGAGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'6-9,'6-6,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.098
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.5=95.4)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTGAGGGGGAGCTGCTC
R:
CCATTGGTGTTTCCCGGGTAA
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]