GgaEX0007772 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7346324-7347471:+
Coord C1 exon
chr15:7346324-7346516
Coord A exon
chr15:7346899-7347084
Coord C2 exon
chr15:7347306-7347471
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTGTGCTCGTTGCAGTGT
3' ss Score
8.25
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GTGAAGAGCGTCAACCTGTCAGACGGGGAGGTGCTTTCCATCCGTGGCGTGGATGACGACACGCTGGTGGTGCTGGCCAACCAGACACTGCTGGTGGAAGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTCTACTTCCGTACCTTCCAGGACGAGGCGGTGGGGACCTTCCAGCTGCACTACCAGG
Seq A exon
TGTTTATGCTGAGCTGCAGCTTCCCACGAAGACCCGACTTTGGAGACGTCACCGTGATGGACCTGCACTCGGGTGGCATTGCTCACTTCCACTGCCATCTGGGCTACGAGCTGCAGGGCCCCCACATGCTCACCTGCATCAACGCGTCCCGGCCCCACTGGAGCAGCCCCGAGCCCATCTGCTCAG
Seq C2 exon
CGCCCTGCGGAGGCACCGTGCACAACGCCACCATCGGCCGTGTCCTCTCGCCCAGCACCGCGGGCAACCAGTCGGGCAGCATGTACTGCGTGTGGGCCATCACGGCGCCCCCGGGCCAGAAGCTGCACCTGCACTTCGAGAAGCTGCTGCTGGCCGAGAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.5=95.4)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGCTTTCCATCCGTG
R:
CAGTACATGCTGCCCGACTG
Band lengths:
255-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]