Special

BtaEX6073839 @ bosTau6

Exon Skipping

Gene
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71885997-71893178:+
Coord C1 exon
chr17:71885997-71886092
Coord A exon
chr17:71886173-71886357
Coord C2 exon
chr17:71892952-71893178
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCAATGCCCACAGGTG
3' ss Score
7.79
5' ss Seq
GCCGTGAGC
5' ss Score
3.48
Exon sequences
Seq C1 exon
ACAGGGGACGTTGAGATCGTGAACCATAAGACAAAGGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTATTTCTCCAAAGAGGTGGCCCGGAAG
Seq A exon
GTGACTGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCACTACGTGCTGTCCGGCTCCTGGGACGAGCAGATGGAGTGCGCCAAGATTGTGCAAAGCAGCCCCAGCAGCCCCAGCTCAGATGGGAAGCAGAAAACGGTCTACCAGACGCTGCCGGCCAAGCTGCTGTGGAAGAAGCACCCGCTGCC
Seq C2 exon
GGACAACGCGGAGAACATGTACTACTTCTCCGAACTGGCCCTGACCCTCAATGAGAACGAGGAGGGCGTGGCGCCCACAGACAGCCGGCTGCGGCCGGACCAGCGGCTCATGGAGAAGGGCCACTGGGACGAGGCCAACACGGAGAAGCAGCGGCTGGAGGAGAAGCAGCGCGCCAACCGGCGCCGGCGGCTGGAGGCCTGCTCCCGGGGCTGCGGGGTGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146-'27-19,'27-18,28-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.290 C2=0.532
Domain overlap (PFAM):

C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
PF0123713=Oxysterol_BP=FE(16.1=100)
C2:
PF0123713=Oxysterol_BP=FE(20.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGTTGAGATCGTGAAC
R:
GCTTCTCCGTGTTGGCCTC
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]