RnoEX0062437 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83945718-83951845:-
Coord C1 exon
chr14:83951750-83951845
Coord A exon
chr14:83951498-83951673
Coord C2 exon
chr14:83945718-83945944
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGCCAACATCCGCAGGTG
3' ss Score
9.35
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGGGGACATTGAGATTGTGAACCACAAGACCAAGGACCGGTGCCAGCTGAAGTTCGTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGAAAG
Seq A exon
GTGACTGGAGTGGTGAGCGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCCTGGGATGAGCAGATGGAGTGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAAGCAGAAAACCGTGTACCAGACGCTGCCAGCCAAGCTGCTATGGAGGAAATACCCACTGCC
Seq C2 exon
GGAGAACGCGGAGAACATGTACTATTTCTCGGAGCTGGCCCTGACCCTCAACGAGCAGGAGGAGGGCGTGGCGCCCACCGACAGCCGCCTGCGGCCGGACCAGCGGCTGATGGAGAGGGGCCGCTGGGACGAGGCCAACACCGAGAAGCAGCGCCTGGAGGAGAAGCAGCGCCTGAACCGGCGACGGCGGCTGGAGTCGTGCACGGCCGGCTGTGGCGGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'50-40,'50-38,51-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.545
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
PF0123713=Oxysterol_BP=FE(15.4=100)
C2:
PF0123713=Oxysterol_BP=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACAAGACCAAGGACCG
R:
GTTCAGGCGCTGCTTCTCC
Band lengths:
254-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]