DreEX6087052 @ danRer10
Exon Skipping
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7962086-7963876:-
Coord C1 exon
chr10:7963781-7963876
Coord A exon
chr10:7963475-7963659
Coord C2 exon
chr10:7962086-7962306
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTGTCCTGCAGGTC
3' ss Score
12.59
5' ss Seq
CCCGTGAGA
5' ss Score
3.61
Exon sequences
Seq C1 exon
TCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAG
Seq A exon
GTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCC
Seq C2 exon
TGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.473
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
PF0123713=Oxysterol_BP=FE(16.1=100)
C2:
PF0123713=Oxysterol_BP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCCACCTCAAATTCTCC
R:
GCCTGTGCATCTCTCTTCCTT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]