Special

GgaEX6014403 @ galGal3

Exon Skipping

Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11037952-11039192:-
Coord C1 exon
chr15:11039097-11039192
Coord A exon
chr15:11038540-11038724
Coord C2 exon
chr15:11037952-11038172
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTCTCTCCTGCCAGGTG
3' ss Score
13.04
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCTGGTGAAATAGAGATTGTTAACCATAAGTCAAAAGATAAATGCCAGCTGAAATTTACCCCCTACAGCTACTTCTCCAGGGATGTCCCCCGAAAG
Seq A exon
GTGACAGGGGTGGTGAGTGATGCTGATGGCAAAGCCCATTATGTCATGTCAGGCACGTGGGACGAGAAGATGGAGTGCTCCAAGATCGTGCAGAGCAGCCATGGCAGCGCCGGCTCAGAGGGCAAACAGAAAACTGTCTACCAGACACTGTCCCCAAAGGTCTTGTGGAAGAAGTACCCCCTCCC
Seq C2 exon
GGAGAACGCCGAGAACATGTACTTCTTCTCCAGCCTGGCCCTCACCCTGAATGAGCCCGAGGAGCGCGTGGCCCCCACGGACAGCCGGCTGCGCCCCGACCAGAGGCTGATGGAGAGCGGCCGCTGGGATGAGGCCAATGTGGAGAAGCAGCGGCTGGAGGAGAAGCAGAGGGCTGTGCGCCGCAGGAGGGAGGCTGAGGCTGTGGAGGCCCTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.226 C2=0.467
Domain overlap (PFAM):

C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
PF0123713=Oxysterol_BP=FE(16.1=100)
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGAAATTTACCCCCT
R:
CACAGCCTCAGCCTCCCT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]