Special

GgaEX6014403 @ galGal4

Exon Skipping

Gene
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10702436-10703676:-
Coord C1 exon
chr15:10703581-10703676
Coord A exon
chr15:10703024-10703208
Coord C2 exon
chr15:10702436-10702656
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTCTCTCCTGCCAGGTG
3' ss Score
13.04
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCTGGTGAAATAGAGATTGTTAACCATAAGTCAAAAGATAAATGCCAGCTGAAATTTACCCCCTACAGCTACTTCTCCAGGGATGTCCCCCGAAAG
Seq A exon
GTGACAGGGGTGGTGAGTGATGCTGATGGCAAAGCCCATTATGTCATGTCAGGCACGTGGGACGAGAAGATGGAGTGCTCCAAGATCGTGCAGAGCAGCCATGGCAGCGCCGGCTCAGAGGGCAAACAGAAAACTGTCTACCAGACACTGTCCCCAAAGGTCTTGTGGAAGAAGTACCCCCTCCC
Seq C2 exon
GGAGAACGCCGAGAACATGTACTTCTTCTCCAGCCTGGCCCTCACCCTGAATGAGCCCGAGGAGCGCGTGGCCCCCACGGACAGCCGGCTGCGCCCCGACCAGAGGCTGATGGAGAGCGGCCGCTGGGATGAGGCCAATGTGGAGAAGCAGCGGCTGGAGGAGAAGCAGAGGGCTGTGCGCCGCAGGAGGGAGGCTGAGGCTGTGGAGGCCCTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'30-21,'30-19,32-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.226 C2=0.467
Domain overlap (PFAM):

C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
PF0123713=Oxysterol_BP=FE(16.1=100)
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGAAATTTACCCCCT
R:
CACAGCCTCAGCCTCCCT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]