BtaEX6074110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73722659-73730997:-
Coord C1 exon
chr17:73730812-73730997
Coord A exon
chr17:73725761-73725868
Coord C2 exon
chr17:73722659-73722719
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTCCTCCCCGCAGGCC
3' ss Score
13.95
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCCATGAAGCCTCTGAAGGCGGCTGCCACCACCTCTCAGCCCGTGCTGACGAGCCAGCAGATCGAGACCATCTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGACTTCTACGACGGGCTCCTGCCCCGCGTGCAGCAGTGGAGCCGCCAGCAGCGCGTGGGCGACCTCTTCCAGAAGCTG
Seq A exon
GCCAGCCAGCTGGGTGTGTACCGGGCCTTTGTGGACAACTATGAAGTTGCCATGGAAACAGCCGAGAAGTGCTGTCAAGCCAATGCTCAGTTTGCAGAAATCTCTGAG
Seq C2 exon
AACCTGCGAGCCAGGAGCAACAAGGAGGCCAAGGACCAGACGACCAAGAACTCTCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.714
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
PF0062115=RhoGEF=FE(18.5=100)
C2:
PF0062115=RhoGEF=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGAAGCCTCTGAAGG
R:
AGAGAGTTCTTGGTCGTCTGGT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]