RnoEX6062424 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14466869-14473618:-
Coord C1 exon
chr20:14473433-14473618
Coord A exon
chr20:14469328-14469435
Coord C2 exon
chr20:14466869-14466929
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCTTCCACCCTGCAGGCC
3' ss Score
10.25
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCCATGAAGCCTCTGAAAGCCGCTGCCACCACGTCTCAGCCTGTGCTGACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTATGACGGGCTCTTTCCCCGCGTACAACAGTGGAGCCACCAGCAGCGCGTGGGTGACCTCTTCCAGAAGCTG
Seq A exon
GCCAGCCAGCTGGGCGTGTACCGGGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
Seq C2 exon
AACCTGAGGGCCAGAAGCAACAAGGACGTCAAGGACTCAACTACCAAGAACTCTTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
PF0062115=RhoGEF=FE(18.5=100)
C2:
PF0062115=RhoGEF=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGAAGCCTCTGAAAGCC
R:
TCCAAAGAGTTCTTGGTAGTTGAGT
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]