GgaEX0009545 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8866230-8871758:-
Coord C1 exon
chr15:8871573-8871758
Coord A exon
chr15:8867815-8867922
Coord C2 exon
chr15:8866230-8866290
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGCTTCCTGCAGGCC
3' ss Score
11.26
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTATGAAGCCTTTGAAAGCAGCTGCCACCACCTCTCAGCCTGTGCTGACTAGTCAGCAGATTGAGACAATATTCTTCAAAGTGCCTGAGCTGTACGAGATCCACAAAGAATTCTATGATGGACTCTTTCCCCGAGTGCAGCAGTGGAGTCACCAGCAACGTGTCGGAGACCTCTTCCAAAAGCTG
Seq A exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
Seq C2 exon
AATCTAAAGGCTAGAAGCACAAAGGAATCTAAAGATCAGACGACGAAAAATTCCTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'4-11,'4-10,5-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
PF0062115=RhoGEF=FE(18.5=100)
C2:
PF0062115=RhoGEF=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTTTGAAAGCAGCTGC
R:
TTTCCAAGGAATTTTTCGTCGTCTG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]