GgaEX0009545 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8610571-8616099:-
Coord C1 exon
chr15:8615914-8616099
Coord A exon
chr15:8612156-8612263
Coord C2 exon
chr15:8610571-8610631
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGCTTCCTGCAGGCC
3' ss Score
11.26
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTATGAAGCCTTTGAAAGCAGCTGCCACCACCTCTCAGCCTGTGCTGACTAGTCAGCAGATTGAGACAATATTCTTCAAAGTGCCTGAGCTGTACGAGATCCACAAAGAATTCTATGATGGACTCTTTCCCCGAGTGCAGCAGTGGAGTCACCAGCAACGTGTCGGAGACCTCTTCCAAAAGCTG
Seq A exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
Seq C2 exon
AATCTAAAGGCTAGAAGCACAAAGGAATCTAAAGATCAGACGACGAAAAATTCCTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'17-12,'17-9,18-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
PF0062115=RhoGEF=FE(18.5=100)
C2:
PF0062115=RhoGEF=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTTTGAAAGCAGCTGC
R:
TTTCCAAGGAATTTTTCGTCGTCTG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]