DreEX0016850 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17142506-17152529:+
Coord C1 exon
chr21:17142506-17142691
Coord A exon
chr21:17149909-17150016
Coord C2 exon
chr21:17152469-17152529
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTCTTCCCGCAGGCT
3' ss Score
12.78
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTATGAAGCCCCTGAAAGCAGCAGCCACCACCTCCCAGCCTGTCCTCACTGTTCAACAGATCGAAACCATCTTCTTTAAAGTGCCTGAGCTCTACGAGATCCACAAAGAATTTTACGATAGCCTTTTGCCCAGAGTGCAGCAGTGGAGTCACCACCAGCGTGTGGGAGACCTTTTCCAAAAACAA
Seq A exon
GCTAGTCAGCTTGGATTGTATAGAGCCTTTGTGGATAATTACGAACTCGCCGTGGAGACCGCAGAGAAGTGCTGTCAAGCGAACACACAGTTTGCAGAGATCTCTGAG
Seq C2 exon
AGTCTCAAGGTCAGGAGCACCAAGGAGTGCAAGGACCTGACAGCCAAATACTCACTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
PF0062115=RhoGEF=FE(18.5=100)
C2:
PF0062115=RhoGEF=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAGCCCCTGAAAGCAGC
R:
CCAGTGAGTATTTGGCTGTCAGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]