DreEX0016851 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17149909-17152854:+
Coord C1 exon
chr21:17149909-17150016
Coord A exon
chr21:17152469-17152529
Coord C2 exon
chr21:17152802-17152854
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGGTATCTCTGCAGAGT
3' ss Score
9.94
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCTAGTCAGCTTGGATTGTATAGAGCCTTTGTGGATAATTACGAACTCGCCGTGGAGACCGCAGAGAAGTGCTGTCAAGCGAACACACAGTTTGCAGAGATCTCTGAG
Seq A exon
AGTCTCAAGGTCAGGAGCACCAAGGAGTGCAAGGACCTGACAGCCAAATACTCACTGGAAA
Seq C2 exon
CTCTGCTCTATAAACCAGTGGACAGAGTGACCCGGAGCACGCTTGTTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
PF0062115=RhoGEF=FE(10.6=100)
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATAATTACGAACTCGCCG
R:
ATGCAAAACAAGCGTGCTCC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]