BtaEX6074111 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73721413-73725868:-
Coord C1 exon
chr17:73725761-73725868
Coord A exon
chr17:73722659-73722719
Coord C2 exon
chr17:73721413-73721465
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACGCGCTCTTCTCTCTGCAGAAC
3' ss Score
11.64
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCCAGCCAGCTGGGTGTGTACCGGGCCTTTGTGGACAACTATGAAGTTGCCATGGAAACAGCCGAGAAGTGCTGTCAAGCCAATGCTCAGTTTGCAGAAATCTCTGAG
Seq A exon
AACCTGCGAGCCAGGAGCAACAAGGAGGCCAAGGACCAGACGACCAAGAACTCTCTGGAAA
Seq C2 exon
CCCTGCTGTACAAGCCCGTGGACCGGGTGACCCGGAGCACGCTGGTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'10-13,'10-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
PF0062115=RhoGEF=FE(10.6=100)
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGCTGGGTGTGTACC
R:
GGTCCACGGGCTTGTACAG
Band lengths:
129-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]