GgaEX0009546 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8865269-8867922:-
Coord C1 exon
chr15:8867815-8867922
Coord A exon
chr15:8866230-8866290
Coord C2 exon
chr15:8865269-8865321
Length
61 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTTTTCTTTTAGAAT
3' ss Score
10.12
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
Seq A exon
AATCTAAAGGCTAGAAGCACAAAGGAATCTAAAGATCAGACGACGAAAAATTCCTTGGAAA
Seq C2 exon
CTCTGCTATACAAGCCAGTGGATCGAGTGACTCGCAGCACACTTGTACTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'5-13,'5-11,7-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
PF0062115=RhoGEF=FE(10.6=100)
C2:
PF0062115=RhoGEF=FE(15.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCGGGCCTTTGTGGATA
R:
TACAAGTGTGCTGCGAGTCAC
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]