MmuEX6049018 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75135894-75143134:+
Coord C1 exon
chr10:75135894-75136001
Coord A exon
chr10:75140990-75141050
Coord C2 exon
chr10:75143082-75143134
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTTTCGCTCCACAGAAC
3' ss Score
12.38
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCCAGCCAGCTGGGTGTGTACCGAGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
Seq A exon
AACCTGCGAGCCAGAAGCAACAAGGATGTCAAGGACTCAACTACCAAGAACTCTTTGGAAA
Seq C2 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACGCTAGTCCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'17-13,'17-12,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
PF0062115=RhoGEF=FE(10.6=100)
C2:
PF0062115=RhoGEF=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTACCGAGCCTTTGTGG
R:
TGAAGGACTAGCGTGCTCCTC
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types