DreEX0000810 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30551130-30551509:+
Coord C1 exon
chr8:30551130-30551237
Coord A exon
chr8:30551328-30551379
Coord C2 exon
chr8:30551457-30551509
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTTTACCGTTTCACCTTCAGAAT
3' ss Score
10.04
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCCAGCCAGCTTGGCGTGTACAGAGCTTTTGTGGACAACTATAAGATTGCAGTGGAAACGGCTGAAAAGTGTTGCCAAGCCAATTCTCAGTTTGCTGAGATTTCAGAG
Seq A exon
AATCTGAAAGTCAAGAGCGCCAAAGACCAGAATGCCAAGCACTCTCTGGAAA
Seq C2 exon
CGCTGCTGTATAAACCAGTGGATCGGGTCACTCGCAGCACACTCGTCCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.8=100)
A:
PF0062115=RhoGEF=FE(9.1=100)
C2:
PF0062115=RhoGEF=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCGTGTACAGAGCTTT
R:
AGTGACCCGATCCACTGGTTT
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]