RnoEX6062425 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14463621-14469435:-
Coord C1 exon
chr20:14469328-14469435
Coord A exon
chr20:14466869-14466929
Coord C2 exon
chr20:14463621-14463673
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTTTCTCCCCACAGAAC
3' ss Score
13.88
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCCAGCCAGCTGGGCGTGTACCGGGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
Seq A exon
AACCTGAGGGCCAGAAGCAACAAGGACGTCAAGGACTCAACTACCAAGAACTCTTTGGAAA
Seq C2 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACACTAGTCCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
PF0062115=RhoGEF=FE(10.6=100)
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCGGGCCTTTGTGGATA
R:
AGGACTAGTGTGCTCCTCGTC
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]