DreEX6083907 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17152469-17156388:+
Coord C1 exon
chr21:17152469-17152529
Coord A exon
chr21:17152802-17152854
Coord C2 exon
chr21:17156248-17156388
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTGTCTCTGCCAGCTC
3' ss Score
9.2
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGTCTCAAGGTCAGGAGCACCAAGGAGTGCAAGGACCTGACAGCCAAATACTCACTGGAAA
Seq A exon
CTCTGCTCTATAAACCAGTGGACAGAGTGACCCGGAGCACGCTTGTTTTGCAT
Seq C2 exon
GATCTTCTAAAACACACCCCCTCCAGTCACCCAGATTACCCGCTCCTGCAGGACGCCCTTCGTATCTCACAAAACTTCCTGTCCAGCATTAACGAAGAGAGCACTCCTCGCCGCCAGTCCATGACCGTGAAGAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'9-10,'9-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGGTCAGGAGCACCAA
R:
TGCTGGACAGGAAGTTTTGTGA
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]