BtaEX6074112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73719513-73722719:-
Coord C1 exon
chr17:73722659-73722719
Coord A exon
chr17:73721413-73721465
Coord C2 exon
chr17:73719513-73719653
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTGTCTCCCCACAGCCC
3' ss Score
13.1
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AACCTGCGAGCCAGGAGCAACAAGGAGGCCAAGGACCAGACGACCAAGAACTCTCTGGAAA
Seq A exon
CCCTGCTGTACAAGCCCGTGGACCGGGTGACCCGGAGCACGCTGGTCCTGCAC
Seq C2 exon
GACTTGCTGAAACACACGCCCCCCAGCCACCCTGACCACCCGCTGCTGCAGGACGCCCTCCGCATCTCGCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAGAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'12-15,'12-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.000 C2=0.447
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
Main Skipping Isoform:
ENSBTAT00000029392fB986
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCAGACGACCAAGAACT
R:
GGCGTGATCTCCTCGTTGATG
Band lengths:
137-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]