GgaEX6014156 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8609133-8610631:-
Coord C1 exon
chr15:8610571-8610631
Coord A exon
chr15:8609610-8609662
Coord C2 exon
chr15:8609133-8609273
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCGTTTTTTTCACAGCTC
3' ss Score
10.02
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AATCTAAAGGCTAGAAGCACAAAGGAATCTAAAGATCAGACGACGAAAAATTCCTTGGAAA
Seq A exon
CTCTGCTATACAAGCCAGTGGATCGAGTGACTCGCAGCACACTTGTACTGCAT
Seq C2 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'20-14,'20-13,22-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.181
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACGACGAAAAATTCCTTGGA
R:
CTGCCGACGAGGAGTGATCTC
Band lengths:
143-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]