RnoEX6048620 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64611820-64616753:-
Coord C1 exon
chr10:64616693-64616753
Coord A exon
chr10:64612493-64612545
Coord C2 exon
chr10:64611820-64611960
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCGCCCTCCCACAGCTC
3' ss Score
10.93
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGACCCAAGGACTCTAAGGACAGCCACACATCAGTCACCATGGAAG
Seq A exon
CTCTGCTGTATAAGCCTATTGACCGAGTCACTCGGAGTACCCTGGTCCTGCAC
Seq C2 exon
GATCTGTTGAAGCACACACCTGTGGACCACCCCGACTACCCACTGCTTCAGGATGCCCTTCGAATCTCCCAGAATTTTCTATCTAGCATTAATGAGGATATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'23-15,'23-14,27-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
ENSRNOT00000080703fB425
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAAGTGAAAGGACCCAAGG
R:
TCTGGGAGATTCGAAGGGCAT
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]