GgaEX1005750 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6326543-6328398:+
Coord C1 exon
chr19:6326543-6326603
Coord A exon
chr19:6328019-6328071
Coord C2 exon
chr19:6328258-6328398
Length
53 bp
Sequences
Splice sites
3' ss Seq
ACACCTTGTGTCTCCCACAGCGC
3' ss Score
11.28
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAGCTGAAGGTGAAAGGCCCCAAGGACTCGAAGGAGAGCCACACGTCCGTCACCATGGAGG
Seq A exon
CGCTGCTGTACAAACCCATTGACCGTGTCACCCGGAGCACCCTTGTTCTGCAC
Seq C2 exon
GACCTCCTCAAGCACACCCCGTCTGACCACCCCGACTACCCACTGCTGCAGGACGCCCTCCGCATCTCACAGAACTTCCTCTCCAGCATCAATGAGGACATCGATCCTCGGAGGACAGCGGTCACCACTCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'11-9,'11-7,14-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGTGAAAGGCCCCAAG
R:
AGTTCTGTGAGATGCGGAGGG
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]