DreEX6014037 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61842802-61859071:+
Coord C1 exon
chr5:61842802-61842862
Coord A exon
chr5:61857080-61857132
Coord C2 exon
chr5:61858931-61859071
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTCATGTTTGTCTTGCAGCTC
3' ss Score
12.03
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AATCTGAAAGTTAAAGGTCCTAAGGAATCCAAGGACTGCACTGCAACCGCCACAATGGAGG
Seq A exon
CTCTCCTCTACAAACCTATTGACCGGGTTACTCGAAGCACTCTAGTCCTGCAT
Seq C2 exon
GACCTGTTGAAGCACACTCCTAAGGATCATCCCGATTTCCCCTTACTGCAGGACGCTCTGAGAATATCCCAGAACTTCCTGTCCAGCATCAATGAAGAGATCGACCCACGCAGGACTGCCGTGACCACACCAAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'8-9,'8-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCAAGGACTGCACTGCA
R:
GCGTGGGTCGATCTCTTCATT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]