MmuEX6087633 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76277030-76282278:-
Coord C1 exon
chr11:76282218-76282278
Coord A exon
chr11:76277740-76277792
Coord C2 exon
chr11:76277030-76277170
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTCTCGGACTTCCCTACAGCTC
3' ss Score
9.26
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGGCCCAAGGACTCTAAGGACAGCCATACATCAGTCACCATGGAAG
Seq A exon
CTCTGCTGTACAAGCCAATTGACCGAGTCACCCGGAGCACCCTGGTCCTTCAC
Seq C2 exon
GATCTGTTGAAGCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAGGATGCTCTCCGCATCTCCCAGAATTTCCTGTCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'11-20,'11-19,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.7=100),PF104224=LRS4=FE(14.2=100)
A:
PF0062115=RhoGEF=FE(10.8=100),PF104224=LRS4=PD(9.2=72.2)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGAAAGGGCCCAAGGAC
R:
GGAAATTCTGGGAGATGCGGA
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: