BtaEX6085745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22374054-22379837:+
Coord C1 exon
chr19:22374054-22374099
Coord A exon
chr19:22379074-22379126
Coord C2 exon
chr19:22379697-22379837
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTGCTTCCCCAACAGCTC
3' ss Score
10.06
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATGGAAATACTTCTCATCATTCGCTTCTGCTGTAACTGCACCTATG
Seq A exon
CTCTGCTCTACAAGCCCATTGACCGAGTCACCAGGAGCACCCTGGTCCTACAC
Seq C2 exon
GACCTGCTGAAGCACACACCTGTGGACCACCCAGACTACCCGCTGCTACAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'31-12,'31-11,34-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(7.4=25.0)
A:
PF0062115=RhoGEF=FE(31.5=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCATTCGCTTCTGCTGT
R:
GTCCTCGTTGATGCTGGACAG
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]