HsaEX6019755 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1072614-1079390:-
Coord C1 exon
chr17:1079330-1079390
Coord A exon
chr17:1073625-1073677
Coord C2 exon
chr17:1072614-1072754
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTCTCCCCCGACAGCTC
3' ss Score
11.68
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGTCCCAAGGACTCCAAGGACAGCCACACGTCTGTCACCATGGAAG
Seq A exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
Seq C2 exon
GACCTGCTGAAGCACACACCTGTGGACCACCCCGACTACCCGCTGCTGCAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'66-50,'66-49,79-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(31.5=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAGGACTCCAAGGACAG
R:
GTCCTCGTTGATGCTGGACAG
Band lengths:
143-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains