HsaEX6019755 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:975854-982630:-
Coord C1 exon
chr17:982570-982630
Coord A exon
chr17:976865-976917
Coord C2 exon
chr17:975854-975994
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTCTCCCCCGACAGCTC
3' ss Score
11.68
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGTCCCAAGGACTCCAAGGACAGCCACACGTCTGTCACCATGGAAG
Seq A exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
Seq C2 exon
GACCTGCTGAAGCACACACCTGTGGACCACCCCGACTACCCGCTGCTGCAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.2=100),PF104224=LRS4=FE(14.1=100)
A:
PF0062115=RhoGEF=FE(10.4=100),PF104224=LRS4=PD(10.6=83.3)
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAGGACTCCAAGGACAG
R:
GTCCTCGTTGATGCTGGACAG
Band lengths:
143-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)