RnoEX0014496 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14461381-14466929:-
Coord C1 exon
chr20:14466869-14466929
Coord A exon
chr20:14463621-14463673
Coord C2 exon
chr20:14461381-14461521
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCTGTCTCTTCACAGCTC
3' ss Score
11.94
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AACCTGAGGGCCAGAAGCAACAAGGACGTCAAGGACTCAACTACCAAGAACTCTTTGGAAA
Seq A exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACACTAGTCCTTCAC
Seq C2 exon
GACTTGCTAAAGCACACTCCATCCAGCCATCCCGACCATTCCCTGCTGCAAGATGCCCTCCGCATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=FE(9.0=100)
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAAGGACGTCAAGGACT
R:
TCTCCTCGTTGATGCTGGACA
Band lengths:
145-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]