BtaEX6074461 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:396583-399486:-
Coord C1 exon
chr20:399418-399486
Coord A exon
chr20:397455-397526
Coord C2 exon
chr20:396583-396654
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTTTCTTTTCCTAGTGA
3' ss Score
9
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GTACCTGGAAGGAAACCACTTAACAGCCGTGCCCAAGGAGCTATCCAGCTTCCGACATCTGACACTCAT
Seq A exon
TGACCTGAGCAACAACAGCATCGGCATGCTGACCAACTACACCTTCAGCAACATGTCTCACCTCTCTACCCT
Seq C2 exon
GATCCTGAGCTACAACCGGCTGCGGTGCATCCCCGTCCACTCCTTCAACGGGCTGCGGTCCCTCCGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(46.9=100)
A:
PF127992=LRR_4=PD(44.9=88.0),PF138551=LRR_8=PU(8.6=20.0)
C2:
PF138551=LRR_8=FE(41.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAGGAAACCACTTAACA
R:
GACCGCAGCCCGTTGAAG
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]