RnoEX0083474 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20460589-20462521:+
Coord C1 exon
chr10:20460589-20460657
Coord A exon
chr10:20461792-20461863
Coord C2 exon
chr10:20462450-20462521
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCACTTCCATCTAGTGA
3' ss Score
7.07
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTACCTGGAAGGAAATCATTTAACGGCGGTGCCCAAAGAATTGTCCACCTTCCGACAGCTGACACTAAT
Seq A exon
TGACCTGAGCAACAACAGCATCAGTATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACACT
Seq C2 exon
GATCCTGAGCTACAACCGGCTGAGATGCATCCCGGTCCATGCCTTCAACGGGCTAAGGTCACTCCGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.8)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAGGAAATCATTTAACGGC
R:
ACTCGGAGTGACCTTAGCCC
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]