MmuEX6084743 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35649033-35651819:+
Coord C1 exon
chr11:35649033-35649101
Coord A exon
chr11:35651100-35651171
Coord C2 exon
chr11:35651748-35651819
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTCTCTTTACCTAGTGA
3' ss Score
6.99
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTACCTGGAAGGAAACCATTTAACAGCAGTGCCCAAAGAGTTGTCTGCCTTCCGACAGCTGACCCTTAT
Seq A exon
TGACCTGAGCAACAACAGCATCAGCATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACGCT
Seq C2 exon
GATCCTGAGCTACAACCGGCTGAGATGCATCCCTGTCCATGCCTTCAACGGGCTAAGATCCCTCCGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'45-52,'45-51,52-52=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.8)
A:
PF127992=LRR_4=PD(30.8=48.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAGGAAACCATTTAACAGC
R:
AGCACTCGGAGGGATCTTAGC
Band lengths:
138-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types