GgaEX0002328 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3963470-3965006:+
Coord C1 exon
chr13:3963470-3963538
Coord A exon
chr13:3964683-3964754
Coord C2 exon
chr13:3964935-3965006
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATGTATTCCTTCAGTGA
3' ss Score
7.96
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATACCTGGAAGGGAACCACCTGACTGCTGTGCCGAAGGGACTCTCTGCCTTCAGGCACCTGACACTGAT
Seq A exon
TGATTTGAGCAACAACAGCATAAGTGTATTGGCCAATTATACCTTCAGCAACATGACCCAGTTATCAACACT
Seq C2 exon
CATCTTGAGCTACAACAGACTTCGGTGCATTCCAGTCCACGCGTTCAATGGGCTCAGGTCTCTTAGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(52.3=100)
A:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCACCTGACTGCTGTG
R:
CACTCTAAGAGACCTGAGCCCA
Band lengths:
128-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]