BtaEX6074707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020601 | ZNF366
Description
zinc finger protein 366 [Source:HGNC Symbol;Acc:HGNC:18316]
Coordinates
chr20:9079815-9094324:+
Coord C1 exon
chr20:9079815-9080006
Coord A exon
chr20:9090738-9090912
Coord C2 exon
chr20:9093801-9094324
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTGGTCACTGTCTCGACAGCTT
3' ss Score
7.88
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCGTGAAGGAGCACAAATGTGGGATCTGCGGGCGGGAGTTCACGCTGCTGGCCAACATGAAGAGACACGTGCTGATCCACACCAACATCCGTGCCTACCAGTGTCACCTCTGCTACAAGAGCTTTGTGCAGAAACAGACCCTCAAGGCACACATGATTGTCCACTCGGACGTGAAGCCCTTCAAATGCAAG
Seq A exon
CTTTGTGGGAAGGAATTCAACCGGATGCACAACCTCATGGGCCACATGCACCTGCACTCCGACAGCAAGCCCTTCAAGTGCCTCTACTGCCCCAGCAAGTTCACCCTGAAGGGGAACCTGACTCGCCACATGAAAGTGAAGCACGGGGTCATGGAGCGCGGCCTCCACTCTCAAG
Seq C2 exon
GTTTTGGAAGGGGGAGAATTGCGCTGGCGCCGACGGCGGGGGCCCTGCGGAGCCTGGAGCAGGAGGAGCCCTTCGACCTGTCCCAGAAGCGCCGGGCCAAGGGGCCAGCCTTCCAGTCGGACGGGGAGAGCGCCCGGGGCAGCTCCTGCCACGAGGAGGAGGACGAGGACAACTGCTACGAGGTGGAGCCGGACAGCCCGGGCCTCGGGCCCCGCGGCCCGCCGCTCTGCGCGCCGCGGGACCTGTCTGCCAAGCCGGAGCCGGGCCCCGGGGAGGAGGCGCCCGCCGAGGAGGCCTCGCCTCCGGGGGCCCGCCCGCTGAAGAGCCGCGACAGCCTGGGGCCTGAGGGCGGCCCCGAGCGAGAGTTCGCCCGCAGAGACGAGCGGCCTGGCCTCCGGGTCCTGCCGAGCACCCGGAGGGGCCCAGCCTTTTCTGATTACTTGTACTTCAAGCACAGAGATGAGAGTTTAAAAGAATTACTGGAGAGGAAAATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020601-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.805
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAACAGACCCTCAAGGC
R:
TAGCAGTTGTCCTCGTCCTCC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]