MmuEX6059927 @ mm9
Exon Skipping
Gene
ENSMUSG00000050919 | Zfp366
Description
zinc finger protein 366 [Source:MGI Symbol;Acc:MGI:2178429]
Coordinates
chr13:100004052-100016992:+
Coord C1 exon
chr13:100004052-100004243
Coord A exon
chr13:100013869-100014043
Coord C2 exon
chr13:100015976-100016992
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCTGTCTCCAACAGCTG
3' ss Score
10.08
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTGTGAAGGAACACAAATGCGGGATCTGTGGGCGTGAGTTCACCCTGCTGGCCAACATGAAGAGACACGTGCTGATCCACACCAACATCCGTGCCTACCAGTGTCATCTCTGCTACAAGAGCTTCGTGCAGAAGCAGACCCTCAAGGCTCACATGATCGTCCACTCGGATGTGAAGCCTTTCAAATGCAAG
Seq A exon
CTGTGTGGGAAGGAATTCAACAGAATGCACAACCTGATGGGGCACCTGCACCTGCACTCGGACAGCAAGCCCTTCAAGTGTCTCTACTGCCCCAGTAAGTTCACGCTGAAGGGGAACCTGACCCGCCACATGAAGGTCAAGCACGGAGTGATGGAGCGAGGCCTGCACTCTCAAG
Seq C2 exon
GTCTGGGTAGGGGACGACTCGTCCTGGTGCAGTCCGCTGGTGTCCTGAGGAATCTAGAGCAGGAGGAACCATTTGACCTCTCCCAGAAGCGCAGTGCGAACGGGCCAATGTTCCAGTCCGACGTGGACAGCACGCAGGACTGCCTCTGCCAGGAGGAGGAGGAGGAGGCCGGGGAAGAGGACAACTGCTACGAAGTGGAGCCCTATAGCCCCAGTCTGGCCCCGGAGAGCCAGCAGCTCTGCGCGCCTGAGGATCTGTCCACCAAGCAGGAGCAGACCCTGCAGGACCCTGGAGAAGGATGCAGGGATCAGGATGCTCCGGAAGAGCAGCAGGAGGACAGGAGCGAGGACCACGAGGGCAGTGACATAGACTGCGAGGGCAAAGACATAGACTGTGCCATCAGAGAGGAGCGCTTGAGCAGCCGGCTGTTGCAAAGCGGCGGACAGGGCCCCTCGTTTTCTGATTACTTATACTTCAAGCACAGAGATGAGGGCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050919-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.596
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATGATCGTCCACTCGGA
R:
GGCTCCACTTCGTAGCAGTTG
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: