GgaEX6049622 @ galGal4
Exon Skipping
Gene
ENSGALG00000015008 | ZNF366
Description
zinc finger protein 366 [Source:HGNC Symbol;Acc:HGNC:18316]
Coordinates
chrZ:25062408-25077438:+
Coord C1 exon
chrZ:25062408-25062599
Coord A exon
chrZ:25069306-25069480
Coord C2 exon
chrZ:25071921-25077438
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTTTTGACAGCTG
3' ss Score
10.13
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTGTAAAAGAGCACAAATGTGGAATCTGTGGACGGGAGTTTACTCTGCTGGCCAACATGAAGAGACATGTCCTGATCCACACCAATATCAGAGCCTATCAGTGCCATTTGTGCTTCAAGAGCTTTGTGCAAAAGCAGACTCTCAAGGCGCACATGATTGTTCACTCCGATGTCAAACCCTTTAAGTGCAAG
Seq A exon
CTGTGTGGAAAGGAGTTTAACCGAATGCACAATTTAATGGGACATATGCACTTACATTCAGACAGTAAGCCCTTCAAGTGCCTCTACTGTCCCAGCAAATTCACCTTGAAGGGGAACCTCACCAGGCATATGAAAGTCAAACACGGGGTCATGGAAAGAGGATTTCATTCTCAAG
Seq C2 exon
GTTTTGGAAGAGGGAGAATTGCTCTGTCCCAGACAAATGTGTTGAGAAGCTTGGAACAGGAAGAGCCCTTTGATCTTTCCCAGAAAAGCCAAGGGAAGGGGATCTCATTTCATTCGGATGGCGAGAGTGCCAAGGGAAGCTCATGCCAAGAAGAAGAAGAAGACAACTGCTATGAGGCAGAGCAGTACAGCCCTGGTGTGTACCATCATGACAGCAACAAGTTGTACGTTCCTCAAGATCTGTCTGGCAAACCACAGTGCATGATGAAGGGCTTCAGAGAGTCTTACTGCAGTGAGAAGGAAGAAATATTAAGTGAGGAAGGACTGGAGAAGAGAGTAGGAGATTCCAACAACCAGGAGAGCCCAGGAGAGAGAGACCTTGCAAACGACAAGGAGCACCTGAGCTTTAGAGCCTTTGAAAAAGCCAGTCTGGGGCACTCTCTCTCTGATTACTTGTATTTCAAGCACAGGAGCAAGAGTCTGAAAGAATTACTGGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015008-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.410
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCTGGCCAACATGAAG
R:
AGATCCCCTTCCCTTGGCTTT
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]