RnoEX6008381 @ rn6
Exon Skipping
Gene
ENSRNOG00000017249 | Zfp366
Description
zinc finger protein 366 [Source:RGD Symbol;Acc:2322904]
Coordinates
chr2:29484252-29498664:+
Coord C1 exon
chr2:29484252-29484443
Coord A exon
chr2:29494170-29494344
Coord C2 exon
chr2:29497063-29498664
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCGGTCTCTGTCTCCAACAGCTG
3' ss Score
10
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTGTGAAAGAGCACAAGTGCGGGATCTGTGGGCGTGAGTTCACCCTGCTGGCCAACATGAAGAGACACGTGCTGATCCACACCAACATCCGTGCCTACCAGTGTCACCTGTGCTACAAGAGCTTCGTGCAGAAGCAGACCCTCAAGGCACACATGATCGTCCACTCTGATGTGAAGCCTTTCAAATGCAAG
Seq A exon
CTGTGCGGGAAGGAATTCAACAGGATGCACAACCTGATGGGCCACCTGCACCTGCACTCGGACAGCAAGCCCTTCAAGTGTCTCTACTGTCCCAGTAAGTTCACGCTGAAGGGGAACCTGACCCGCCATATGAAGGTCAAGCATGGCGTGATGGAGCGAGGCCTTCACTCTCAAG
Seq C2 exon
GTCTGGGTAGGGGACGACTCGTCCTGGCACAGTCCACTGGTGCGCTGAGGAATCTGGAGCAGGAGGAGCCGTTTGACCTCTCCCAAAAGCGCAGTGCAAAGGGGCCAATGTTCCAGTCCGACATGGACAGCACGCAGGGCTGCCTCTACCCAGAGGAGGAGGAGGAAGAGGAGGAGGAGGCAGATGAAGAGGACAAGTGCTATGACGTGGAGCCCTATAGCCCCACCCTGGCCTTGGAGAGCCAGCAGCTCTGTGCGCCTGAGGATCTGTCCACCAAGCAAGAGCAGGCCCCGAAAGGCCCTGGAGAAGGATGCCAGGATCAGGACACTCCAGAAGAGCCGCAGGAGGACAGTAGCGAGGACCATGAGAGTAGAGACATAGACTGTGAAGTCAGAGACGAGCGACTGAGCAGCAGGCTGTTGCAAAGCGGCGGGCAGGGCCCCTCGTTTTCTGATTACTTATACTTCAAGCACAGAGATGAGGGTTTAAAAGAATTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017249-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.778
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACTCTGATGTGAAGCC
R:
ATAGGGCTCCACGTCATAGCA
Band lengths:
252-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]