DreEX0088130 @ danRer10
Exon Skipping
Gene
ENSDARG00000040116 | znf366
Description
zinc finger protein 366 [Source:ZFIN;Acc:ZDB-GENE-110408-46]
Coordinates
chr8:890309-897807:-
Coord C1 exon
chr8:897616-897807
Coord A exon
chr8:891518-891692
Coord C2 exon
chr8:890309-891080
Length
175 bp
Sequences
Splice sites
3' ss Seq
AATAGTTACTCTCTTTACAGCTG
3' ss Score
7.81
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
GGAGTGAAGGAGCACAAGTGTCGCATCTGTGGCCGTGAGTTCACACTGCTGGCCAACATGAAGCGCCACGTTCTGATCCACACCAACATCCGCGCGTATCAGTGTGAGCTGTGCTACAAGAGCTTCGTGCAGAAACAGACGCTCAAGGCTCACATGATCGTCCACTCCGACATCAAACCCTACAAATGCAAG
Seq A exon
CTGTGTGGAAAGGAGTTTAACAGAATGCATAATCTGATGGGCCACATGCACTTGCATTCTGACAGCAAACCCTTCAAATGCCTTTACTGCGCCAGCAAGTTCACGCTGAAGGGGAACCTGACGCGCCACATGAAGATCAAGCACGGCATCATGGACCAGGGCCTGGATGCTCGCG
Seq C2 exon
TGTGCAGACGCCAGGGTCGGTTGTGTCTCTCGGGCCCCCTGCGGATCCTGTCCCGCATCGGTCAGGACGAACCCTTCGATCTGTCCCAGAAAAACCCACTGCGTCTTTCTCAATCTGACGGCGAGAGCGTCCGCGGCGGCAGCTCCAGTCGAGAGGAGGACGAGGACAGCGTCTACAGAATGAGCCAATACAGTCCTGACAGAGAAAACCCTGCGGAGGCCCGAGACCAGGAGGACGAAAAGAAGACATCACACCTCGCACAGATACACAGCGACAAGGAGGAGGATTTCTGAGCAGGACGACTTTGAGTTGTTGTCTTGTTTCTACTCCAGATATCTAAAAATTCTTAAATCAGGAAGCATTTTCTAGATATATATCAGATAACACTTTATTTTAAGTAACAATTCACACCATTCATTTACTTCTGATTTATATCCTGCCTAATATTAAGATATTAAACATTTATTAGCACTTATAAAGTATGATCTTATTCTAAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040116-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.732
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(16.2=20.3),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACAGACGCTCAAGGCT
R:
TTCTGTAGACGCTGTCCTCGT
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]