BtaEX6075791 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41292933-41298209:+
Coord C1 exon
chr20:41292933-41293223
Coord A exon
chr20:41294842-41294986
Coord C2 exon
chr20:41297991-41298209
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTCTCTTTCTTTAGGAT
3' ss Score
12.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAATATAGCCAGCAGCCAGCTTCGGGTGTAGCCTACTCTCATCCAACCACCGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTATGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTCGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGTTACCCCACTGCACACACAGCGACTGACTATGGTTATACACAGAGGCAACAAGAAGCACCTCCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq A exon
GATTCATACTCATATGTAAGATCCACAGCTCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAACCAACAGCAACTGCTGCTGCTGTAGCTGCCGCCGCCCAGCCTCAGCCTTCCGTTGCTGAGACCTACTATCAGACAG
Seq C2 exon
CCCCTAAAGCAGGTTATAGCCAAGGTGCAACTCAGTATACACAAGCCCAGCAAACTCGACAAGTGACAGCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTATCCTCCACCGTACAGCCAGTAGCAGCTGCAGCTACTGTGGTGCCATCCTATACCCAGAGTGCTACTTATAGTACCACGGCAGTTACCTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.163 C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTAGCTGCTCACACAGT
R:
TGCACCTTGGCTATAACCTGC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]